SRX097112
GSM788371: H3K4me1 ChIP-seq K562 bmp4

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
H3K4me1_K562
cell line
K562
chip antibody
H3K4me1
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM788371: H3K4me1 ChIP-seq K562 bmp4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34780692
Reads aligned (%)
62.6
Duplicates removed (%)
15.7
Number of peaks
10859 (qval < 1E-05)

hg19

Number of total reads
34780692
Reads aligned (%)
62.1
Duplicates removed (%)
16.4
Number of peaks
10913 (qval < 1E-05)

Base call quality data from DBCLS SRA