SRX096366
GSM790215: EWS502 H3K4me3 ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Bone
Cell type
EWS502
NA
NA

Attributes by original data submitter

Sample

source_name
Ewing Sarcoma cells
cell line
EWS502
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM790215: EWS502_H3K4me3_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
85061270
Reads aligned (%)
83.7
Duplicates removed (%)
37.2
Number of peaks
39519 (qval < 1E-05)

hg19

Number of total reads
85061270
Reads aligned (%)
83.5
Duplicates removed (%)
37.6
Number of peaks
39480 (qval < 1E-05)

Base call quality data from DBCLS SRA