Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTNNB1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cultured CRC cells
antibody
bCat
cell line
LS180 cells
passages
12-19
treatment
1,25(OH)2D3

Sequenced DNA Library

library_name
GSM791408: LS180_bCat_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
106043826
Reads aligned (%)
15.2
Duplicates removed (%)
79.0
Number of peaks
2339 (qval < 1E-05)

hg38

Number of total reads
106043826
Reads aligned (%)
16.5
Duplicates removed (%)
77.4
Number of peaks
2099 (qval < 1E-05)

Base call quality data from DBCLS SRA