SRX096138
GSM791785: H3K4me3 LKOJarid1b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
chip or dip
ChIP
cell type
LKO Jarid1b ESCs
chip/dip antibody
H3K4me3 [Tri-Methyl-Histone H3 (Lys4) (C42D8) Rabbit mAb]
chip/dip antibody vendor
Cell Signaling

Sequenced DNA Library

library_name
GSM791785: H3K4me3_LKOJarid1b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3525714
Reads aligned (%)
80.5
Duplicates removed (%)
7.2
Number of peaks
13724 (qval < 1E-05)

mm9

Number of total reads
3525714
Reads aligned (%)
80.3
Duplicates removed (%)
7.4
Number of peaks
13737 (qval < 1E-05)

Base call quality data from DBCLS SRA