SRX096136
GSM791783: Jarid1b 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kdm5b

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
chip or dip
ChIP
cell type
E14 ESCs
chip/dip antibody
Jarid1b-DAIN

Sequenced DNA Library

library_name
GSM791783: Jarid1b_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7926492
Reads aligned (%)
50.1
Duplicates removed (%)
11.9
Number of peaks
357 (qval < 1E-05)

mm9

Number of total reads
7926492
Reads aligned (%)
50.0
Duplicates removed (%)
12.2
Number of peaks
373 (qval < 1E-05)

Base call quality data from DBCLS SRA