SRX095620
GSM789450: NP H3K4me1 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
strain
Mixed (129-C57Bl/6)
cell type
ES-derived neural progenitor cells
antibody
H3K4me1
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM789450: NP_H3K4me1_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
55471213
Reads aligned (%)
85.2
Duplicates removed (%)
56.4
Number of peaks
1370 (qval < 1E-05)

mm9

Number of total reads
55471213
Reads aligned (%)
85.2
Duplicates removed (%)
56.5
Number of peaks
1365 (qval < 1E-05)

Base call quality data from DBCLS SRA