SRX095402
GSM762716: Ramos Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RAMOS
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Ramos
strain
B-cell lymphoma cell line
cell type
B-cell
chip antibody
No antibody (Input control)

Sequenced DNA Library

library_name
GSM762716: Ramos_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2319752
Reads aligned (%)
97.2
Duplicates removed (%)
0.9
Number of peaks
43 (qval < 1E-05)

hg19

Number of total reads
2319752
Reads aligned (%)
96.2
Duplicates removed (%)
1.2
Number of peaks
44 (qval < 1E-05)

Base call quality data from DBCLS SRA