SRX095352
GSM786612: EGFP KD-RNA Polymerase II ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
EGFP KD-RNA Polymerase II ChIP
genotype/variation
EGFP KD
cell type
embryonic stem (ES) cells
chip antibody
PolII

Sequenced DNA Library

library_name
GSM786612: EGFP KD-RNA Polymerase II ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21936849
Reads aligned (%)
92.0
Duplicates removed (%)
41.3
Number of peaks
1225 (qval < 1E-05)

mm9

Number of total reads
21936849
Reads aligned (%)
91.8
Duplicates removed (%)
41.5
Number of peaks
1202 (qval < 1E-05)

Base call quality data from DBCLS SRA