SRX095349
GSM786609: Mbd3 rep2 ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Mbd3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mbd3 ChIP
genotype/variation
WT
cell type
embryonic stem (ES) cells
chip antibody
Mbd3

Sequenced DNA Library

library_name
GSM786609: Mbd3 rep2 ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22291993
Reads aligned (%)
86.7
Duplicates removed (%)
18.3
Number of peaks
652 (qval < 1E-05)

mm9

Number of total reads
22291993
Reads aligned (%)
86.5
Duplicates removed (%)
18.4
Number of peaks
730 (qval < 1E-05)

Base call quality data from DBCLS SRA