SRX093540
GSM769220: HeLa SPT20-chip-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SUPT20H

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
cell type
HeLa cells
antibody
Rabbit polyclonal
chip antibody
SPT20_3006
vendor
Laszlo Tora

Sequenced DNA Library

library_name
GSM769220: HeLa_SPT20-chip-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28903276
Reads aligned (%)
94.6
Duplicates removed (%)
22.6
Number of peaks
793 (qval < 1E-05)

hg19

Number of total reads
28903276
Reads aligned (%)
93.9
Duplicates removed (%)
23.7
Number of peaks
941 (qval < 1E-05)

Base call quality data from DBCLS SRA