SRX093173
GSM785846: 8 H3K27me3 ChIP Seq Day1 mES s 3 sequence

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse ES
strain
AINV15
cell type
Esrrb_Rescue Clone
time point
Day1
fraction
Chromatin IP
antibody
H3K27me3
antibody vendor
Upstate

Sequenced DNA Library

library_name
GSM785846: 8_H3K27me3_ChIP_Seq_Day1_mES_s_3_sequence
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31749947
Reads aligned (%)
81.2
Duplicates removed (%)
39.1
Number of peaks
552 (qval < 1E-05)

mm9

Number of total reads
31749947
Reads aligned (%)
81.1
Duplicates removed (%)
39.2
Number of peaks
582 (qval < 1E-05)

Base call quality data from DBCLS SRA