SRX093168
GSM785841: 3 H3K4me3 ChIP Seq Day0 mES s 8 sequence

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse ES
strain
AINV15
cell type
Esrrb_Rescue Clone
time point
Day0
fraction
Chromatin IP
antibody
H3K4me3
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM785841: 3_H3K4me3_ChIP_Seq_Day0_mES_s_8_sequence
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24729021
Reads aligned (%)
87.8
Duplicates removed (%)
46.1
Number of peaks
34323 (qval < 1E-05)

mm9

Number of total reads
24729021
Reads aligned (%)
87.6
Duplicates removed (%)
46.2
Number of peaks
34554 (qval < 1E-05)

Base call quality data from DBCLS SRA