SRX092573
GSM779430: ZNF143 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF143

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Suspension HeLa cells
cell line
HeLa, cycling
chip antibody
ZNF143; Polyclonal anti-ZNF143 (ZNF143, {Cold Spring Harbor, 19164 #4})

Sequenced DNA Library

library_name
GSM779430: ZNF143_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31346092
Reads aligned (%)
95.9
Duplicates removed (%)
10.8
Number of peaks
2543 (qval < 1E-05)

hg19

Number of total reads
31346092
Reads aligned (%)
95.1
Duplicates removed (%)
12.2
Number of peaks
2540 (qval < 1E-05)

Base call quality data from DBCLS SRA