SRX092473
GSM773995: RUNX1 ChIPSeq Rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Runx1

Cell type

Cell type Class
Blood
Cell type
EML
NA
NA

Attributes by original data submitter

Sample

source_name
EML cells
sequence type
Illumina; single-end;35bp reads
antibody
anti-AML(RUNX1) rabbit polyclonal antibody
vendor
CalBiochem
catalog
PC284
cell type
Lin-SCA+CD34+ cells

Sequenced DNA Library

library_name
GSM773995: RUNX1_ChIPSeq_Rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21450390
Reads aligned (%)
53.4
Duplicates removed (%)
28.7
Number of peaks
9426 (qval < 1E-05)

mm9

Number of total reads
21450390
Reads aligned (%)
53.2
Duplicates removed (%)
28.9
Number of peaks
9424 (qval < 1E-05)

Base call quality data from DBCLS SRA