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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Isl1
wikigenes
PDBj
CellType: mESC derived neural cells
ATCC
MeSH
RIKEN BRC
SRX092471
GSM782848: ChIP-seq analysis of Isl1/2 in iNIL3 induced motor neurons (Day 4)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Isl1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
induced motor neurons (Day4 iNIL differentiation)
cell line
Ainv15 (ATCC SCRC-1029) with Dox-inducible Ngn2.Isl1.Lhx3-V5 construct
cell treatment
+Dox 48hrs
cell stage
induced motor neurons (Day4 iNIL differentiation)
chip antibody
anti-Isl1/2 (gift from Dr. T. Jessell)
Sequenced DNA Library
library_name
GSM782848: ChIP-seq analysis of Isl1/2 in iNIL3 induced motor neurons (Day 4)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
26439726
Reads aligned (%)
93.8
Duplicates removed (%)
79.2
Number of peaks
15836 (qval < 1E-05)
mm9
Number of total reads
26439726
Reads aligned (%)
93.7
Duplicates removed (%)
79.3
Number of peaks
16646 (qval < 1E-05)
Base call quality data from
DBCLS SRA