Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
Lymphoma, B-Cell
MeSH Description
A group of heterogeneous lymphoid tumors generally expressing one or more B-cell antigens or representing malignant transformations of B-lymphocytes.

Attributes by original data submitter

Sample

source_name
B cells
cell line
Cell line derived from Burkitt's lymphoma
passage
Multiple
chip antibody
CTCF
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM782156: BJAB_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
26259307
Reads aligned (%)
80.9
Duplicates removed (%)
13.8
Number of peaks
14773 (qval < 1E-05)

hg38

Number of total reads
26259307
Reads aligned (%)
82.9
Duplicates removed (%)
12.5
Number of peaks
14630 (qval < 1E-05)

Base call quality data from DBCLS SRA