Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Blood
Cell type
Th1 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete INTERLEUKIN-2; INTERFERON-GAMMA; and INTERLEUKIN-12. Due to their ability to kill antigen-presenting cells and their lymphokine-mediated effector activity, Th1 cells are associated with vigorous delayed-type hypersensitivity reactions.

Attributes by original data submitter

Sample

source_name
Th1 cells
chip antibody
GATA-3; Antibody vendor: Santa Cruz; Antibody catalog number:sc-22206; Antibody lot number: F1306
cell type
Th1
cell number
100000000

Sequenced DNA Library

library_name
GSM776558: Th1_GATA3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
22427785
Reads aligned (%)
60.0
Duplicates removed (%)
27.8
Number of peaks
14238 (qval < 1E-05)

hg38

Number of total reads
22427785
Reads aligned (%)
61.5
Duplicates removed (%)
26.5
Number of peaks
14162 (qval < 1E-05)

Base call quality data from DBCLS SRA