Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUND

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
UChicago
lab description
White - University of Chicago
data type
ChipSeq
data type description
ChIP-Seq
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
antibody
eGFP-JunD
antibody antibody description
Goat polyclonal
antibody target description
JunD
antibody vendor name
Kevin White
antibody vendor id
(None)
control
Control_eGFP-JunD
control description
This data represents a control being compared to experiments using antibody eGFP-JunD
control
Control_eGFP-JunD
control description
This data represents a control being compared to experiments using antibody eGFP-JunD
control id
K562/Input/Control_eGFP-JunD
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM777639: UChicago_ChipSeq_K562_eGFP-JunD_Control_eGFP-JunD
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
69000767
Reads aligned (%)
88.8
Duplicates removed (%)
8.4
Number of peaks
62161 (qval < 1E-05)

hg38

Number of total reads
69000767
Reads aligned (%)
90.4
Duplicates removed (%)
7.3
Number of peaks
62470 (qval < 1E-05)

Base call quality data from DBCLS SRA