Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR4A1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
UChicago
lab description
White - University of Chicago
data type
ChipSeq
data type description
ChIP-Seq
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
antibody
eGFP-NR4A1
antibody antibody description
Goat polyclonal
antibody target description
NR4A1
antibody vendor name
Kevin White
antibody vendor id
(None)
control
Control_eGFP-NR4A1
control description
This data represents a control being compared to experiments using antibody eGFP-NR4A1
control
Control_eGFP-NR4A1
control description
This data represents a control being compared to experiments using antibody eGFP-NR4A1
control id
K562/Input/Control_eGFP-NR4A1
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM777637: UChicago_ChipSeq_K562_eGFP-NR4A1_Control_eGFP-NR4A1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
49137116
Reads aligned (%)
92.3
Duplicates removed (%)
5.5
Number of peaks
1676 (qval < 1E-05)

hg38

Number of total reads
49137116
Reads aligned (%)
94.8
Duplicates removed (%)
3.8
Number of peaks
1660 (qval < 1E-05)

Base call quality data from DBCLS SRA