SRX091907
GSM774380: qHF-SC H3K27me3 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse back skins
strain
CD-1
gender
female
age
P52-60
sorting markers
integrin alpha 6 and CD34
chip antibody
H3K27me3 (Millipore, 07-449)

Sequenced DNA Library

library_name
GSM774380: qHF-SC_H3K27me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
63396974
Reads aligned (%)
62.6
Duplicates removed (%)
47.8
Number of peaks
439 (qval < 1E-05)

mm9

Number of total reads
63396974
Reads aligned (%)
62.5
Duplicates removed (%)
47.9
Number of peaks
463 (qval < 1E-05)

Base call quality data from DBCLS SRA