SRX091905
GSM774378: qHF-SC H3K4me3 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse back skins
strain
CD-1
gender
female
age
P52-60
sorting markers
integrin alpha 6 and CD34
chip antibody
H3K4me3 (Abcam, ab1012)

Sequenced DNA Library

library_name
GSM774378: qHF-SC_H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
60119926
Reads aligned (%)
65.8
Duplicates removed (%)
84.0
Number of peaks
15635 (qval < 1E-05)

mm9

Number of total reads
60119926
Reads aligned (%)
65.8
Duplicates removed (%)
84.0
Number of peaks
15645 (qval < 1E-05)

Base call quality data from DBCLS SRA