SRX091824
GSM770758: AB32 PR ChIP Replicate1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
AB32 PR positive transformed normal breast cell line
tissue
Breast
cell line
AB32
malignant status
normal transformed

Sequenced DNA Library

library_name
GSM770758: AB32_PR_ChIP_Replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28059525
Reads aligned (%)
97.9
Duplicates removed (%)
20.6
Number of peaks
22630 (qval < 1E-05)

hg19

Number of total reads
28059525
Reads aligned (%)
97.0
Duplicates removed (%)
22.1
Number of peaks
22568 (qval < 1E-05)

Base call quality data from DBCLS SRA