SRX091671
GSM774290: ThyDP H3K27me3 sample2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
ThyDP
strain
C57BL/6
genetic background
TCRa -/-
cell type
Adult thymic DP (pre-positive selection)
chip antibody
H3K27me3 (Millipore 07-449)

Sequenced DNA Library

library_name
GSM774290: ThyDP_H3K27me3_sample2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22649345
Reads aligned (%)
70.1
Duplicates removed (%)
4.7
Number of peaks
6653 (qval < 1E-05)

mm9

Number of total reads
22649345
Reads aligned (%)
70.0
Duplicates removed (%)
4.8
Number of peaks
6673 (qval < 1E-05)

Base call quality data from DBCLS SRA