SRX091668
GSM774287: ThyDN3 H3K27me3 sample1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA

Attributes by original data submitter

Sample

source_name
ThyDN3
strain
C57BL/6
genetic background
wildtype
cell type
Adult thymic DN3
chip antibody
H3K27me3 (Millipore 07-449)

Sequenced DNA Library

library_name
GSM774287: ThyDN3_H3K27me3_sample1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51727628
Reads aligned (%)
74.2
Duplicates removed (%)
8.0
Number of peaks
2719 (qval < 1E-05)

mm9

Number of total reads
51727628
Reads aligned (%)
74.0
Duplicates removed (%)
8.0
Number of peaks
2561 (qval < 1E-05)

Base call quality data from DBCLS SRA