SRX091664
GSM774283: FLDN1 H3K27me3 sample2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA

Attributes by original data submitter

Sample

source_name
FLDN1
strain
C57BL/6
genetic background
wildtype
cell type
Fetal liver precursor derived DN1
chip antibody
H3K27me3 (Millipore 07-449)

Sequenced DNA Library

library_name
GSM774283: FLDN1_H3K27me3_sample2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
58545234
Reads aligned (%)
77.0
Duplicates removed (%)
5.1
Number of peaks
2412 (qval < 1E-05)

mm9

Number of total reads
58545234
Reads aligned (%)
76.9
Duplicates removed (%)
5.1
Number of peaks
2543 (qval < 1E-05)

Base call quality data from DBCLS SRA