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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me2
wikigenes
PDBj
CellType: CD4 CD8 double negative cells
ATCC
MeSH
RIKEN BRC
SRX091658
GSM774277: FLDN2b H3K4me2 sample2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me2
Cell type
Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA
Attributes by original data submitter
Sample
source_name
FLDN2b
strain
C57BL/6
genetic background
wildtype
cell type
Fetal liver precursor derived DN2b
chip antibody
H3K4me2 (Millipore 07-030)
Sequenced DNA Library
library_name
GSM774277: FLDN2b_H3K4me2_sample2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34881988
Reads aligned (%)
74.3
Duplicates removed (%)
5.6
Number of peaks
35475 (qval < 1E-05)
mm9
Number of total reads
34881988
Reads aligned (%)
74.2
Duplicates removed (%)
5.7
Number of peaks
35504 (qval < 1E-05)
Base call quality data from
DBCLS SRA