SRX091657
GSM774276: FLDN2b H3K4me2 sample1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA

Attributes by original data submitter

Sample

source_name
FLDN2b
strain
C57BL/6
genetic background
wildtype
cell type
Fetal liver precursor derived DN2b
chip antibody
H3K4me2 (Millipore 07-030)

Sequenced DNA Library

library_name
GSM774276: FLDN2b_H3K4me2_sample1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20422317
Reads aligned (%)
55.7
Duplicates removed (%)
4.9
Number of peaks
17485 (qval < 1E-05)

mm9

Number of total reads
20422317
Reads aligned (%)
55.6
Duplicates removed (%)
5.1
Number of peaks
17465 (qval < 1E-05)

Base call quality data from DBCLS SRA