Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Epidermis
Cell type
Melanocytes
MeSH Description
Mammalian pigment cells that produce MELANINS, pigments found mainly in the EPIDERMIS, but also in the eyes and the hair, by a process called melanogenesis. Coloration can be altered by the number of melanocytes or the amount of pigment produced and stored in the organelles called MELANOSOMES. The large non-mammalian melanin-containing cells are called MELANOPHORES.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
SFVAMC Dermatology
BIOMATERIAL_TYPE
Primary Cell Culture
CELL_TYPE
Melanocyte
MARKERS
NA
CULTURE_CONDITIONS
Invitrogen 154CF + HKGS + .07mM Ca
DONOR_ID
skin01
DONOR_AGE
Neonate
DONOR_HEALTH_STATUS
Disease Free
DONOR_SEX
male
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
2
KARYOTYPE
46, XY
PARITY
NA
sample_term_id
CL_2000045

Sequenced DNA Library

library_name
DS18590
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
52981173
Reads aligned (%)
98.1
Duplicates removed (%)
26.9
Number of peaks
102171 (qval < 1E-05)

hg19

Number of total reads
52981173
Reads aligned (%)
97.4
Duplicates removed (%)
28.5
Number of peaks
102003 (qval < 1E-05)

Base call quality data from DBCLS SRA