Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Fibroblasts

NA

NA

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

SFVAMC Dermatology

BIOMATERIAL_TYPE

Primary Cell Culture

CELL_TYPE

Fibroblast

MARKERS

NA

CULTURE_CONDITIONS

Invitrogen 154CF + HKGS + .07mM Ca

DONOR_ID

skin01

DONOR_AGE

Neonate

DONOR_HEALTH_STATUS

Disease Free

DONOR_SEX

male

DONOR_ETHNICITY

NA

PASSAGE_IF_EXPANDED

2

KARYOTYPE

46, XY

PARITY

NA

sample_term_id

CL_1001608

Sequenced DNA Library

library_name

DS18224

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

111109214

Reads aligned (%)

95.9

Duplicates removed (%)

40.9

Number of peaks

199447 (qval < 1E-05)

hg19

Number of total reads

111109214

Reads aligned (%)

95.4

Duplicates removed (%)

42.2

Number of peaks

204944 (qval < 1E-05)