SRX089240
Chromatin accessibility assay of Moblized CD3 Primary Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD3+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
Mobilized CD3 Primary Cells
MARKERS
CD3+
DONOR_ID
RO 01508
DONOR_AGE
year 36
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000084

Sequenced DNA Library

library_name
DS11148
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49045702
Reads aligned (%)
83.3
Duplicates removed (%)
18.4
Number of peaks
26622 (qval < 1E-05)

hg19

Number of total reads
49045702
Reads aligned (%)
82.6
Duplicates removed (%)
19.8
Number of peaks
26524 (qval < 1E-05)

Base call quality data from DBCLS SRA