SRX088970
GSM773067: KAP1 ChIP in E14 ES cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trim28

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
KAP1 ChIP in E14 ES cells
cell type
embryonic stem (ES) cells
chip antibody
KAP1 (RBCC)
expressed transgene
None

Sequenced DNA Library

library_name
GSM773067: KAP1 ChIP in E14 ES cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
90659716
Reads aligned (%)
91.2
Duplicates removed (%)
48.5
Number of peaks
2135 (qval < 1E-05)

mm9

Number of total reads
90659716
Reads aligned (%)
90.9
Duplicates removed (%)
48.5
Number of peaks
2127 (qval < 1E-05)

Base call quality data from DBCLS SRA