SRX088726
ChIP-Seq analysis of H3K9me3 in human hNP (ES H9 derived Nuronal Progenitors) cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

DONOR_HEALTH_STATUS
NA
MOLECULE
genomic DNA
DISEASE
none
MARKERS
>90% nestin(+) and <5% Oct-4(+)
CULTURE_CONDITIONS
Medium: Cultured in defined proliferation medium containing AB2+ANS plus FGF2 and LIF on Matrigel-coated surfaces.
PASSAGE_IF_EXPANDED
NA
CELL_TYPE
hNP (ES H9 derived Nuronal Progenitors)
DONOR_ETHNICITY
NA
DONOR_SEX
Unknown
BIOMATERIAL_TYPE
Primary Cell Culture
DONOR_ID
113
BIOMATERIAL_PROVIDER
ArunA Biomedical, Athens, GA
DONOR_AGE
NA
sample_term_id
CL_0000047

Sequenced DNA Library

library_name
Lib:RI:20101012:09--ChIP:MA:20100927:09:hNP (ES H9 derived Nuronal Progenitors):H3K9Me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
75761432
Reads aligned (%)
97.1
Duplicates removed (%)
16.9
Number of peaks
2420 (qval < 1E-05)

hg19

Number of total reads
75761432
Reads aligned (%)
95.9
Duplicates removed (%)
18.3
Number of peaks
1840 (qval < 1E-05)

Base call quality data from DBCLS SRA