SRX088712
ChIP-Seq analysis of H3K4me3 in human HUES48 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC HUES48
NA
NA

Attributes by original data submitter

Sample

SEX
Unknown
BIOMATERIAL_PROVIDER
Harvard University
DIFFERENTIATION_METHOD
NA
MOLECULE
genomic DNA
sample_term_id
NTR_0000848
PASSAGE
NA
BIOMATERIAL_TYPE
Cell Line
LINE
HUES48
DIFFERENTIATION_STAGE
undifferentiated
MEDIUM
KSR
DISEASE
none
BATCH
ES cell HUES_48-2
CELL_TYPE
HUES48 stem cells
LINEAGE
embrionic stem cell

Sequenced DNA Library

library_name
Lib EpiLabSPL Row 1714
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43836681
Reads aligned (%)
81.9
Duplicates removed (%)
15.7
Number of peaks
33015 (qval < 1E-05)

hg19

Number of total reads
43836681
Reads aligned (%)
79.8
Duplicates removed (%)
18.2
Number of peaks
32275 (qval < 1E-05)

Base call quality data from DBCLS SRA