SRX087846
GSM770690: NMU.H3K27m3.ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Others
Cell type
NHU
NA
NA

Attributes by original data submitter

Sample

source_name
Normal urothelium cells
cell line
NHU
tissue
normal bladder
chip antibody
H3K27m3 (Millipore; 07-449)

Sequenced DNA Library

library_name
GSM770690: NMU.H3K27m3.ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12490239
Reads aligned (%)
90.5
Duplicates removed (%)
14.9
Number of peaks
395 (qval < 1E-05)

hg19

Number of total reads
12490239
Reads aligned (%)
90.0
Duplicates removed (%)
15.4
Number of peaks
394 (qval < 1E-05)

Base call quality data from DBCLS SRA