SRX087845
GSM770689: EJ.H3K9m3.ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Others
Cell type
EJ-1
Primary Tissue
Urinary Bladder
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Urinary bladder cancer cell line
cell line
EJ
tissue
bladder cancer
chip antibody
H3K9m3 (Millipore; 07-442)

Sequenced DNA Library

library_name
GSM770689: EJ.H3K9m3.ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18759874
Reads aligned (%)
86.1
Duplicates removed (%)
15.1
Number of peaks
1155 (qval < 1E-05)

hg19

Number of total reads
18759874
Reads aligned (%)
83.9
Duplicates removed (%)
16.2
Number of peaks
1250 (qval < 1E-05)

Base call quality data from DBCLS SRA