SRX087843
GSM770687: RT112.H3K9m3.ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Others
Cell type
RT-112
Primary Tissue
Urinary Bladder
Tissue Diagnosis
Carcinoma Transitional Cell

Attributes by original data submitter

Sample

source_name
Urinary bladder cancer cell line
cell line
RT112
tissue
bladder cancer
chip antibody
H3K9m3 (Millipore; 07-442)

Sequenced DNA Library

library_name
GSM770687: RT112.H3K9m3.ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7649773
Reads aligned (%)
89.5
Duplicates removed (%)
26.4
Number of peaks
493 (qval < 1E-05)

hg19

Number of total reads
7649773
Reads aligned (%)
88.0
Duplicates removed (%)
28.3
Number of peaks
545 (qval < 1E-05)

Base call quality data from DBCLS SRA