SRX087277
GSM757809: RNA-PolII 6h-ATRA ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
F9
Tissue
Testis
Disease
Embryonal Carcinoma; Testicular Teratoma

Attributes by original data submitter

Sample

source_name
embryonal carcinoma cells
cell line
F9 embryonal carcinoma cells
chip antibody
polyclonal anti-RNA-PolII (H-224)
chip antibody supplier
Santa Cruz Biotechnology

Sequenced DNA Library

library_name
GSM757809: RNA-PolII_6h-ATRA_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7706104
Reads aligned (%)
93.5
Duplicates removed (%)
12.5
Number of peaks
10981 (qval < 1E-05)

mm9

Number of total reads
7706104
Reads aligned (%)
93.3
Duplicates removed (%)
12.8
Number of peaks
10954 (qval < 1E-05)

Base call quality data from DBCLS SRA