SRX087274
GSM757805: RARg 48h-ATRA ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rarg

Cell type

Cell type Class
Pluripotent stem cell
Cell type
F9
Tissue
Testis
Disease
Embryonal Carcinoma; Testicular Teratoma

Attributes by original data submitter

Sample

source_name
embryonal carcinoma cells
cell line
F9 embryonal carcinoma cells
chip antibody
polyclonal anti-RARg
chip antibody supplier
in-house antibody [generated by immunization of rabbits with the peptide mRARg: PB288 (CSKPGPHPKASSEDEAPGGQGKRGQSPQPD)]

Sequenced DNA Library

library_name
GSM757805: RARg_48h-ATRA_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8437161
Reads aligned (%)
96.2
Duplicates removed (%)
15.0
Number of peaks
503 (qval < 1E-05)

mm9

Number of total reads
8437161
Reads aligned (%)
96.0
Duplicates removed (%)
15.3
Number of peaks
526 (qval < 1E-05)

Base call quality data from DBCLS SRA