Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Embryonic fibroblast

Cell type

MEF

Tissue

Embryonic Fibroblast

Lineage

primaryCells

Description

Mouse Embryonic Fibroblast

Sample

source_name

MEF

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

MEF

cell organism

mouse

cell description

Mouse Embryonic Fibroblast

cell sex

M

antibody

H3K4me3

antibody antibodydescription

rabbit polyclonal

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

Millipore

antibody vendorid

07-473

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

MEF/Input/std

labversion

05/19/09 Lane 1

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769029: lab_ChipSeq_MEF_H3K4me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

41470370

Reads aligned (%)

41.3

Duplicates removed (%)

21.8

Number of peaks

29028 (qval < 1E-05)

mm9

Number of total reads

41470370

Reads aligned (%)

41.2

Duplicates removed (%)

21.9

Number of peaks

29090 (qval < 1E-05)