Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Neural

Cell type

Cerebellar Cortex

MeSH Description

The superficial GRAY MATTER of the CEREBELLUM. It consists of two main layers, the stratum moleculare and the stratum granulosum.

Sample

source_name

Cortex

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

Cortex

cell organism

mouse

cell description

Cortex

cell sex

M

antibody

H3K4me3

antibody antibodydescription

rabbit polyclonal

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

Millipore

antibody vendorid

07-473

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

Cortex/Input/std

labversion

05/26/09 Lane 1

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769026: lab_ChipSeq_Cortex_H3K4me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

40656986

Reads aligned (%)

44.8

Duplicates removed (%)

15.5

Number of peaks

37861 (qval < 1E-05)

mm9

Number of total reads

40656986

Reads aligned (%)

44.8

Duplicates removed (%)

15.6

Number of peaks

37840 (qval < 1E-05)