Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Blood

Cell type

Bone Marrow Cells

MeSH Description

Cells contained in the bone marrow including fat cells (see ADIPOCYTES); STROMAL CELLS; MEGAKARYOCYTES; and the immediate precursors of most blood cells.

Sample

source_name

BoneMarrow

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

BoneMarrow

cell organism

mouse

cell description

Bone Marrow

cell sex

M

antibody

H3K4me3

antibody antibodydescription

rabbit polyclonal

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

Millipore

antibody vendorid

07-473

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

BoneMarrow/Input/std

labversion

11/19/09 Lane 3

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769021: lab_ChipSeq_BoneMarrow_H3K4me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

39737652

Reads aligned (%)

78.1

Duplicates removed (%)

20.8

Number of peaks

32672 (qval < 1E-05)

mm9

Number of total reads

39737652

Reads aligned (%)

77.9

Duplicates removed (%)

20.8

Number of peaks

32767 (qval < 1E-05)