Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Pluripotent stem cell

Cell type

ES cells

NA

NA

Sample

source_name

ES-Bruce4

biomaterial_provider

University of California, San Diego Transgenic Core and Embryonic Stem Cell

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

line

ES-Bruce4

cell organism

mouse

biomaterial_type

mouse embryonic stem cells

cell sex

M

antibody

H3K4me1

antibody antibodydescription

rabbit polyclonal

antibody targetdescription

Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

antibody vendorname

Abcam

antibody vendorid

ab8895

age

E0

age description

Embryonic day 0 (stem cell)

control

std

control description

Standard input signal for most experiments.

controlid

ES-Bruce4/Input/std

labversion

12/23/09 SOLEXA2 Lane 4

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769009: lab_ChipSeq_ES-Bruce4_H3K4me1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

17536822

Reads aligned (%)

86.4

Duplicates removed (%)

3.7

Number of peaks

3436 (qval < 1E-05)

mm9

Number of total reads

17536822

Reads aligned (%)

86.3

Duplicates removed (%)

3.9

Number of peaks

3459 (qval < 1E-05)