Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Mapk8

Cell type

Cell type Class
Neural
Cell type
Neurons
MeSH Description
The basic cellular units of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the NERVOUS SYSTEM.

Attributes by original data submitter

Sample

source_name
Terminally differentiated neurons (TN)
strain
129Sv-C57Bl/6
genotype/variation
wild type
treatment
JNKi
cell type
Terminally differentiated Neurons (TN)
chip antibody
anti-JNK13

Sequenced DNA Library

library_name
GSM768538: TN_JNKi_JNK1/3 [ChIP-Seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
58098372
Reads aligned (%)
84.5
Duplicates removed (%)
58.3
Number of peaks
3764 (qval < 1E-05)

mm9

Number of total reads
58098372
Reads aligned (%)
84.4
Duplicates removed (%)
58.3
Number of peaks
3708 (qval < 1E-05)

Base call quality data from DBCLS SRA