SRX085107
GSM766452: ChIP-Seq for CapH2 in mES cells (DMSO, Flavo control)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ncaph2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell line
V6.5
chip antibody
CAPH2
antibody catalog number
Bethyl A302-275A
antibody manufacturer
Bethyl
treatment
DMSO
tiime
1 hr

Sequenced DNA Library

library_name
GSM766452: ChIP-Seq for CapH2 in mES cells (DMSO, Flavo control)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25024305
Reads aligned (%)
85.0
Duplicates removed (%)
32.9
Number of peaks
2144 (qval < 1E-05)

mm9

Number of total reads
25024305
Reads aligned (%)
84.7
Duplicates removed (%)
33.0
Number of peaks
2058 (qval < 1E-05)

Base call quality data from DBCLS SRA