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Colocalization
Target Genes (TSS ± 1kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: mESC derived neural cells
ATCC
MeSH
RIKEN BRC
SRX084807
GSM766062: Pseudo-ChIP control using anti-V5 in progenitor motor neurons (Day 4)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
Pseudo IP against V5
cell line
Ainv15 (ATCC SCRC-1029) with inducible V5-tagged Olig2
treatment
none
cell stage
progenitor motor neurons (Day4 directed differentiation)
chip antibody
anti-V5 (Abcam, ab15828)
Sequenced DNA Library
library_name
GSM766062: Pseudo-ChIP control using anti-V5 in progenitor motor neurons (Day 4)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
18353136
Reads aligned (%)
58.6
Duplicates removed (%)
13.4
Number of peaks
652 (qval < 1E-05)
mm9
Number of total reads
18353136
Reads aligned (%)
58.5
Duplicates removed (%)
13.6
Number of peaks
706 (qval < 1E-05)
Base call quality data from
DBCLS SRA