SRX084806
GSM766061: ChIP-seq analysis of inducible Flag-tagged Hoxc9 (iFlag-Hoxc9) in progenitor motor neurons (Day 5)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Chromatin IP against Flag
cell line
Ainv15 (ATCC SCRC-1029) with inducible Flag-tagged Hoxc9
treatment
+Dox
cell stage
progenitor motor neurons (Day5 directed differentiation)
chip antibody
anti-Flag (Sigma, F1804-200UG)

Sequenced DNA Library

library_name
GSM766061: ChIP-seq analysis of inducible Flag-tagged Hoxc9 (iFlag-Hoxc9) in progenitor motor neurons (Day 5)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37061244
Reads aligned (%)
96.3
Duplicates removed (%)
15.2
Number of peaks
35854 (qval < 1E-05)

mm9

Number of total reads
37061244
Reads aligned (%)
96.2
Duplicates removed (%)
15.2
Number of peaks
35855 (qval < 1E-05)

Base call quality data from DBCLS SRA