SRX084797
GSM766172: RNA pol II ChIP-seq in SSA treated cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela
growth protocol
DMEM 10% FCS, 20ng/ml spliceostatin A for 12hr
chip antibody
rabbit anti pan CTD (Schroeder et al. Genes Dev. 14:2435, 2000)

Sequenced DNA Library

library_name
GSM766172: RNA pol II ChIP-seq in SSA treated cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7915941
Reads aligned (%)
71.5
Duplicates removed (%)
3.6
Number of peaks
5461 (qval < 1E-05)

hg19

Number of total reads
7915941
Reads aligned (%)
71.0
Duplicates removed (%)
3.7
Number of peaks
5447 (qval < 1E-05)

Base call quality data from DBCLS SRA