SRX084796
GSM766171: RNA pol II ChIP-seq in control cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela
growth protocol
DMEM 10% FCS, no methanol
chip antibody
rabbit anti pan CTD (Schroeder et al. Genes Dev. 14:2435, 2000)

Sequenced DNA Library

library_name
GSM766171: RNA pol II ChIP-seq in control cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7947235
Reads aligned (%)
97.2
Duplicates removed (%)
9.8
Number of peaks
5404 (qval < 1E-05)

hg19

Number of total reads
7947235
Reads aligned (%)
96.7
Duplicates removed (%)
9.9
Number of peaks
5387 (qval < 1E-05)

Base call quality data from DBCLS SRA