SRX084795
GSM766170: H3K36me3 ChIP-seq in SSA treated cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela
growth protocol
DMEM 10% FCS, 20ng/ml spliceostatin A for 12hr
chip antibody
rabbit antibody (homemade) against peptide NH2-ATGGVKme3KPHRYC-COOH (rabbits immunized with peptide coupled to KLH)

Sequenced DNA Library

library_name
GSM766170: H3K36me3 ChIP-seq in SSA treated cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10312570
Reads aligned (%)
89.7
Duplicates removed (%)
19.0
Number of peaks
91 (qval < 1E-05)

hg19

Number of total reads
10312570
Reads aligned (%)
89.0
Duplicates removed (%)
19.3
Number of peaks
56 (qval < 1E-05)

Base call quality data from DBCLS SRA