SRX084516
GSM758174: TNGA-serum RNA-Pol-II

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem cells
strain
C57BL/6 * 129
cell type
ES-cells
chip antibody
RNA Pol II
chip antibody vendor
Diagenode

Sequenced DNA Library

library_name
GSM758174: TNGA-serum_RNA-Pol-II
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
45951852
Reads aligned (%)
82.5
Duplicates removed (%)
68.3
Number of peaks
6958 (qval < 1E-05)

mm9

Number of total reads
45951852
Reads aligned (%)
82.3
Duplicates removed (%)
68.4
Number of peaks
6955 (qval < 1E-05)

Base call quality data from DBCLS SRA